PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g11670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 434aa    MW: 47846.6 Da    PI: 8.2256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g11670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-051941123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  CA03g11670 19 FVCEICNKGFQRDQNLQLHRRGH 41
                89*******************88 PP

2zf-C2H211.80.0007595117123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H +t+
  CA03g11670  95 WKCDKCSKIYAVQSDWKAHSKTC 117
                 58*****************9998 PP

3zf-C2H211.20.0012125143523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg+ Fsrk+++++H   +
  CA03g11670 125 DCGTIFSRKDSFVTHRAFC 143
                 8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-61841No hitNo description
Gene3DG3DSA:3.30.160.601.4E-51841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9491941IPR007087Zinc finger, C2H2
SMARTSM003550.0171941IPR015880Zinc finger, C2H2-like
PfamPF121716.7E-51941IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-483116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-690115No hitNo description
SMARTSM0035518095115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKESKKKAY  60
VCPEPTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKIYAVQSDW KAHSKTCGTR  120
EYRCDCGTIF SRKDSFVTHR AFCDALAEES ARLSANSALM HRAVIASTIV NSSAIGEPNF  180
HLNQSSLFPY PTNQRHFANP PPPPMAAATT VTTHMSLNPW DPQIPLNPNP ITHEEHHNNH  240
NILHPVPIKT ESIHIPFTSS LPFYHEHYYP VIHKGGSFSI PSSPQLSATA LLQKAATMGT  300
HSTVSHVNSV MAQLGHHVTP KLSPEGFLSF ASENMSSNWQ KRENLTRDFL GLTGDHHHDQ  360
DHHDESSSAG GGGGGGFMAN GGNGLLSSFG GDGMHDYQDT LYDRDHSMLK HHQLGFGFGA  420
AAAESTTGTW GDC*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-126HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-126HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565424.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotQ9ZWA61e-104IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLM1BPB70.0M1BPB7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-104C2H2 family protein